PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016476-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 474aa    MW: 52470.6 Da    PI: 5.3489
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016476-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00079124145223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +Cp Cg+++++ ++  +Hi ++
  NNU_016476-RA 124 ECPVCGQPYRSEEEVSTHIESC 145
                    6******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.901.6E-52474No hitNo description
CDDcd092125.82E-20185269No hitNo description
SMARTSM005804.5E-15187254IPR018997PUB domain
SuperFamilySSF1435032.75E-18187266IPR018997PUB domain
PfamPF094092.4E-15188255IPR018997PUB domain
SuperFamilySSF542364.65E-9332440IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.901.6E-5345409No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MDDVKDKFKG FMKKVNNQFS SSSSDKFKGQ GRVLGSSSSG PANPILTRPS QNGDLRQNLP  60
PSNIKQRPSI PNTNGNSDGR LKNEPTPQSI PSSDRIPANG FDPFDSLITS GKRSQNGYSL  120
NVVECPVCGQ PYRSEEEVST HIESCLSSSV ENAQVVGELQ DDGTQMESRN ELAGRIGAFL  180
SGRPSEGSVE VVLKLFRNIV QEPQNAKFRR IRMGNPKIKE AIGDVVGGVE LMEYVGFALQ  240
AEGEEMWAVM EAPLEQQIFL IKEAISLLET RKTEDLPCAN STEGDSSVDS KKVDRQVRVF  300
FSVPESIAAK INLPDSFYNL TAEELRKEAD LRKKKIAESQ LLIPKSYKEK QAKAARKRYK  360
KTVIRIQFPD EVVLQGIFLP WEPTTALYEF ASAALKEPTL EFELLHPVAI KRRVIPRFPE  420
AGGRTPILDD EDLVPSALIK FKPIETDSVV FTGLCNELLE ISEPLRADTA ITPA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271316.10.0PREDICTED: UBX domain-containing protein 6
SwissprotQ9ZU931e-179PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLA5C4920.0A5C492_VITVI; Putative uncharacterized protein
STRINGVIT_01s0011g05570.t010.0(Vitis vinifera)